Item Type | Name |
Concept
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Models, Molecular
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Academic Article
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Thymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed ends.
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Academic Article
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Distinguishing between two-state and three-state models for ubiquitin folding.
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Academic Article
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D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding.
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Academic Article
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Dynamics of hydrogen bond desolvation in protein folding.
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Academic Article
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Entropic benefit of a cross-link in protein association.
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Academic Article
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Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil.
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Academic Article
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The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits.
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Academic Article
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Modular construction of a tertiary RNA structure: the specificity domain of the Bacillus subtilis RNase P RNA.
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Academic Article
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Large-scale context in protein folding: villin headpiece.
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Academic Article
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Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects.
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Academic Article
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Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides.
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Academic Article
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Discerning the structure and energy of multiple transition states in protein folding using psi-analysis.
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Academic Article
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Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding.
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Academic Article
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Fast folding of a helical protein initiated by the collision of unstructured chains.
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Academic Article
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RNA folding: models and perspectives.
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Academic Article
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Characterizing protein folding transition States using Psi-analysis.
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Academic Article
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PII structure in the model peptides for unfolded proteins: studies on ubiquitin fragments and several alanine-rich peptides containing QQQ, SSS, FFF, and VVV.
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Academic Article
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Methods for the accurate estimation of confidence intervals on protein folding phi-values.
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Academic Article
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RNA folding during transcription.
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Academic Article
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Folding of a universal ribozyme: the ribonuclease P RNA.
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Academic Article
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The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection.
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Academic Article
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Kinetic barriers and the role of topology in protein and RNA folding.
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Academic Article
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Quantifying the structural requirements of the folding transition state of protein A and other systems.
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Academic Article
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Light-activated DNA binding in a designed allosteric protein.
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Academic Article
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Barrier-limited, microsecond folding of a stable protein measured with hydrogen exchange: Implications for downhill folding.
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Academic Article
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Reduced contact order and RNA folding rates.
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Academic Article
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Outcome of a workshop on applications of protein models in biomedical research.
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Academic Article
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Psi-constrained simulations of protein folding transition states: implications for calculating.
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Academic Article
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Characterizing the protein folding transition state using psi analysis.
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Academic Article
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Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors.
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Academic Article
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Small proteins fold through transition states with native-like topologies.
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Academic Article
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A probabilistic and continuous model of protein conformational space for template-free modeling.
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Academic Article
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Protein vivisection reveals elusive intermediates in folding.
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Academic Article
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The folding of single domain proteins--have we reached a consensus?
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Academic Article
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Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures.
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Academic Article
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Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy.
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Academic Article
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A "Link-Psi" strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable.
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Academic Article
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Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state.
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Academic Article
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Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch.
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Academic Article
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TULIPs: tunable, light-controlled interacting protein tags for cell biology.
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Academic Article
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Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding.
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Academic Article
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Modeling large regions in proteins: applications to loops, termini, and folding.
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Academic Article
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The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized).
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Academic Article
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Automated real-space refinement of protein structures using a realistic backbone move set.
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Academic Article
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Structures of fd gene 5 protein.nucleic acid complexes: a combined solution scattering and electron microscopy study.
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Academic Article
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Stepwise conversion of a mesophilic to a thermophilic ribozyme.
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Academic Article
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Differences in the folding transition state of ubiquitin indicated by phi and psi analyses.
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Academic Article
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Statistical coil model of the unfolded state: resolving the reconciliation problem.
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Academic Article
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Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.
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Academic Article
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Principal determinants leading to transition state formation of a protein-protein complex, orientation trumps side-chain interactions.
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Academic Article
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Metal binding kinetics of bi-histidine sites used in psi analysis: evidence of high-energy protein folding intermediates.
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Academic Article
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The amino-terminal helix modulates light-activated conformational changes in AsLOV2.
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Academic Article
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Folding of a large protein at high structural resolution.
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Academic Article
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Factors that control the chemistry of the LOV domain photocycle.
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Academic Article
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Investigating models of protein function and allostery with a widespread mutational analysis of a light-activated protein.
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Academic Article
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Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions.
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Academic Article
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Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.
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Academic Article
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Introduction of a polar core into the de novo designed protein Top7.
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Academic Article
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Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core.
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Academic Article
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Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.
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Academic Article
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Structural basis for adhesion G protein-coupled receptor Gpr126 function.
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Academic Article
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Water as a Good Solvent for Unfolded Proteins: Folding and Collapse are Fundamentally Different.
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Academic Article
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Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein.
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